Stem-loop sequence mtr-MIR2111m

Accession

MI0011844 (change log)

Description

Medicago truncatula miR2111m stem-loop

Gene family

MIPF0000754; MIR2111

Literature search

2 open access papers mention mtr-MIR2111m
(8 sentences)

Stem-loop

   --uua      --      u           c         u     -      u 
5'      auuggu  uaagga aggguaaucug auccugagg uuaga gcaaca u
        ||||||  |||||| ||||||||||| ||||||||| ||||| ||||||  
3'      uaacca  auucuu uuucauuagac uagggcucc gaucu uguugu u
   aagug      ua      u           a         u     a      g 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_Mt3.5.2): chr7: 16637685-16637791 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from mtr-MIR2111m

• mtr-MIR2111k: chr7: 16644233-16644366 [-]
• mtr-MIR2111l: chr7: 16644069-16644155 [-]
• mtr-MIR2111m: chr7: 16637685-16637791 [-]
• mtr-MIR2111n: chr7: 16637529-16637662 [-]

Database links

• miRBase Tracker:MI0011844

Mature sequence mtr-miR2111m-5p

• Accession: MIMAT0013297
• Sequence: 21 - uaaucugcauccugagguuua - 41
• Evidence: experimental; 454 [1], Illumina [2]

Mature sequence mtr-miR2111m-3p

• Accession: MIMAT0026928
• Sequence: 65 - guccucgggauacagauuacu - 85
• Evidence: experimental; Illumina [2]

References

1. PMID:19767456 "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules" Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M Plant Cell. 21:2780-2796(2009).
2. PMID:23572382 "microRNA profiling of root tissues and root forming explant cultures in Medicago truncatula" Eyles RP, Williams PH, Ohms SJ, Weiller GF, Ogilvie HA, Djordjevic MA, Imin N Planta. 238:91-105(2013).