Dead hairpin entry

Stem-loop mtr-MIR2630s

Accession

MI0011938

Description

Medicago truncatula mtr-MIR2630s precursor miRNA

Comment

The pattern of deep sequencing reads mapping to this locus does not support its annotation as a microRNA.

Literature search

2 open access papers mention mtr-MIR2630s
(2 sentences)

Sequence

18728 reads, 166.0 reads per million, 111 experiments

cccugcaaauauagaauauuUGGUUUUGGUCCUUGGUAUUUuguuuuaauccuuguaaaaucauuucauauuaaaauuggucccuauaauauucauuuuaguucucauuuugagggacuaaaauuaaauauucuacauauuacaaggaccaaaucgaauaugaaucaAUUUUACAAGGACUAAAAcaaaacaccaaggaccaaaacccaauuuuuuauauuugcaggga
((((((((((((((((.(((.((((((((((((((((.((((((((((.((((((((((((...((((((((....(((((((...((((((..(((((((((((((...))).))))))))))............))))))...)))))))....))))))))...)))))))))))).)))))))))).)))))))))))))))).))).)))))))))))))))).

Structure

-                u   U                A          a            cau        aaaa       cua      ----------uc          -   u 
 cccugcaaauauagaa auu GGUUUUGGUCCUUGGU UUUuguuuua uccuuguaaaau   uucauauu    uuggucc   uaauau            auuuuaguuc uca  
 |||||||||||||||| ||| |||||||||||||||| |||||||||| ||||||||||||   ||||||||    |||||||   ||||||            |||||||||| ||| u
 gggacguuuauauuuu uaa ccaaaaccaggaacca aaaacAAAAU AGGAACAUUUUA   aaguauaa    aaccagg   auuaua            uaaaaucagg agu  
a                u   c                c          C            acu        gcua       aac      caucuuauaaau          g   u