Stem-loop sequence bta-mir-424

Accession

MI0012212 (change log)

Description

Bos taurus miR-424 stem-loop

Gene family

MIPF0000164; mir-322

Literature search

11 open access papers mention bta-mir-424
(114 sentences)

Stem-loop

   ucguuga   -       a  c      aa             g  cu 
5'        cuc cgagggg ug agcagc  uucauguuuugaa ug  u
          ||| ||||||| || ||||||  ||||||||||||| ||  u
3'        gag guucccc au ucgucg  gagugcaaaacuu gc  a
   --ugaag   c       c  a      cg             g  aa 

Deep sequencing

8177 reads, 25 reads per million, 68 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chrX: 18288411-18288506 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from bta-mir-424

• bta-mir-424: chrX: 18288411-18288506 [-]
• bta-mir-503: chrX: 18288067-18288149 [-]
• bta-mir-3601: chrX: 18283115-18283192 [+]
• bta-mir-542: chrX: 18283105-18283201 [-]
• bta-mir-450a-2: chrX: 18282193-18282284 [-]
• bta-mir-450a-1: chrX: 18282042-18282123 [-]
• bta-mir-450b: chrX: 18281872-18281957 [-]

Database links

• EntrezGene:MIR424
• RNAcentral:URS000075CD5B_9913
• miRBase Tracker:MI0012212

Mature sequence bta-miR-424-5p

• Accession: MIMAT0013593
• Previous IDs: bta-miR-424
• Sequence: 21 - cagcagcaauucauguuuuga - 41
• Deep sequencing: 7284 reads, 68 experiments
• Evidence: experimental; cloned [2], Illumina [3]
• Predicted targets:
  • TargetScanVert:bta-miR-424-5p

Mature sequence bta-miR-424-3p

• Accession: MIMAT0015304
• Previous IDs: bta-miR-424*
• Sequence: 58 - caaaacgugaggcgcugcuau - 78
• Deep sequencing: 892 reads, 60 experiments
• Evidence: experimental; cloned [1-2], Illumina [3]
• Predicted targets:
  • TargetScanVert:bta-miR-424-3p

References

1. PMID:19765282 "Identification and characterization of miRNAs expressed in the bovine ovary" Hossain MM, Ghanem N, Hoelker M, Rings F, Phatsara C, Tholen E, Schellander K, Tesfaye D BMC Genomics. 10:443(2009).
2. PMID:19758457 "Characterization of bovine miRNAs by sequencing and bioinformatics analysis" Jin W, Grant JR, Stothard P, Moore SS, Guan LL BMC Mol Biol. 10:90(2009).
3. PMID:21912509 "Solexa sequencing of novel and differentially expressed microRNAs in testicular and ovarian tissues in Holstein cattle" Huang J, Ju Z, Li Q, Hou Q, Wang C, Li J, Li R, Wang L, Sun T, Hang S, Gao Y, Hou M, Zhong J Int J Biol Sci. 7:1016-1026(2011).