miRBase entry: isc-bantam

Stem-loop isc-bantam


Accession
MI0012259
Description
Ixodes scapularis isc-bantam precursor miRNA
Gene family
MIPF0000153; bantam

Literature search
1 open access papers mention isc-bantam
(3 sentences)

Sequence

gccgaagaaacgccagacaaaacugguuuucacaaugaucguccagauggaccugaagucUGAGAUCAUUGUGAAAGCUGAUUuuguugauucagagcuuc
...((((........(((((((.(((((((((((((((((...(((((.........))))).))))))))))))))))).))))))).........))))

Structure
gcc    -aaacgcca       c                 guc     gga 
   gaag         gacaaaa ugguuuucacaaugauc   cagau   c
   ||||         ||||||| |||||||||||||||||   |||||   c
   cuuc         uuguuUU GUCGAAAGUGUUACUAG   GUcug   u
---    gagacuuag       A                 --A     aag 


Annotation confidence Not enough data
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Genome context
DS612599: 38772-38872 [-]

Database links

Mature isc-bantam

Accession MIMAT0012679
Description Ixodes scapularis isc-bantam mature miRNA
Sequence 61 - UGAGAUCAUUGUGAAAGCUGAUU - 83
Evidence not_experimental

References

  1. PubMed ID: 19196333
    The deep evolution of metazoan microRNAs
    "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
    "Evol Dev (2009) 11:50-68