Stem-loop sequence osa-MIR2878

Accession

MI0013043 (change log)

Description

Oryza sativa miR2878 stem-loop

Literature search

3 open access papers mention osa-MIR2878
(18 sentences)

Stem-loop

   -       uuc                                      a 
5'  auaaugu   uuuaguucuuuacauguauaaaauucugaggauguuau u
    |||||||   ||||||||||||||||||||||||||||||||||||||  
3'  uauuaca   aaauuaagaaauguacauauuuuaggacuccuacagua a
   a       uac                                      u 

Deep sequencing

118 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (MSU7): Chr8: 26181373-26181473 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0013043

Mature sequence osa-miR2878-5p

• Accession: MIMAT0013828
• Sequence: 21 - uacauguauaaaauucugaggaug - 44
• Deep sequencing: 103 reads, 2 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS00000278CC_39947

Mature sequence osa-miR2878-3p

• Accession: MIMAT0013829
• Sequence: 63 - caggauuuuauacauguaaagaau - 86
• Deep sequencing: 15 reads, 2 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS0000265462_39947

References

1. PMID:19903869 "Rice MicroRNA effector complexes and targets" Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y Plant Cell. 21:3421-3435(2009).