miRBase entry: osa-MIR396h

Stem-loop osa-MIR396h


Accession
MI0013048
Description
Oryza sativa osa-MIR396h precursor miRNA
Gene family
MIPF0000882; MIR396_2

Literature search
53 open access papers mention osa-MIR396h
(132 sentences)

Sequence

1616 reads, 1122 reads per million, 2 experiments
agggcgccggggaggaggugguggugguggugggggcgacgccggcggagguguucgacgcggcggagguggcggaggaggacggcggcggcggcguggccaaggacauuUCCACAGGCUUUCUUGAACGGuucuugccac
..(((((((..((((((((.((((.((((.....(((.((((((.((..(.(((((..(((.((....)).))).....))))).)..)).)))))).))).....)))).))))..))))))))...))))....)))..

Structure
ag   ----    -gg        -g    u    guggg   g      g  ga g     ---ga   g  g 
  ggc    gccg   gaggaggu  gugg ggug     ggc acgccg cg  g uguuc     cgc gc g
  |||    ||||   ||||||||  |||| ||||     ||| |||||| ||  | |||||     ||| ||  
  ccg    uGGC   UUCUUUCG  CACC uuac     ccg ugcggc gc  c gcagg     gcg ug a
ca   uucu    AAG        GA    U    aggaa   g      g  gg g     aggag   g  g 


Annotation confidence Not enough data
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Genome context
Chr2: 32841661-32841801 [+]

Database links

Mature osa-miR396h

Accession MIMAT0013834
Description Oryza sativa osa-miR396h mature miRNA
Sequence 111 - UCCACAGGCUUUCUUGAACGG - 131
Evidence experimental
Illumina [1]
Database links

References

  1. PubMed ID: 19903869
    Rice MicroRNA effector complexes and targets
    "Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y"
    "Plant Cell (2009) 21:3421-3435