Stem-loop osa-MIR396d

Accession

MI0013049

Description

Oryza sativa osa-MIR396d precursor miRNA

Gene family

MIPF0000882; MIR396_2

Literature search

55 open access papers mention osa-MIR396d
(138 sentences)

Sequence

1875 reads, 1542 reads per million, 2 experiments

uacagcgagugguucuggaaggcgguggaggugacggcggcggccggcgccguggcggggggcugcgaguggggggcgacgagcugcgcuUCCACAGGCUUUCUUGAACGGuugcggccgc
....((((.(.((((.(((((((.(((((((((.((((..((.((..(((((((((.....)))))).)))..)).))....)))))))))))))..))))))).)))).)))))......

Structure

--uaca    g g    u       -g         a    --gg  g  gg   -      g 
      gcga u guuc ggaaggc  guggaggug cggc    cg cc  cgc cguggc g
      |||| | |||| |||||||  ||||||||| ||||    || ||  ||| |||||| g
      cguu G CAAG UCUUUCG  CACCUucgc gucg    gc gg  gug gcgucg g
cgccgg    - G    U       GA         -    agca  g  gg   a      g 

Annotation confidence Not enough data

Genome context

Unknown

Mature osa-miR396d

• Accession: MIMAT0013835
• Description: Oryza sativa osa-miR396d mature miRNA
• Sequence: 91 - UCCACAGGCUUUCUUGAACGG - 111
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19903869
   Rice MicroRNA effector complexes and targets
   "Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y"
   "Plant Cell (2009) 21:3421-3435