Stem-loop ssc-mir-202

Accession

MI0013157

Description

Sus scrofa ssc-mir-202 precursor miRNA

Literature search

7 open access papers mention ssc-mir-202
(10 sentences)

Sequence

4560 reads, 1145 reads per million, 12 experiments

cgccguuccgccUUCCUAUGCAUAUACUUCUUUgagggucuggccugaAGAGGUGUAGGCAUGGGAAaccggggcgacga
((.(((((((..(((((((((.(((((((((((.(((......)))))))))))))).)))))))))..))))))).)).

Structure

-  c       cc         A           g   gu 
 cg cguuccg  UUCCUAUGC UAUACUUCUUU agg  c
 || |||||||  ||||||||| ||||||||||| |||   
 gc gcggggc  AAGGGUACG AUGUGGAGAag ucc  u
a  a       ca         G           -   gg 

Annotation confidence High

Genome context

chr14: 153169585-153169664 [-]

Mature ssc-miR-202-5p

• Accession: MIMAT0013948
• Description: Sus scrofa ssc-miR-202-5p mature miRNA
• Sequence: 13 - UUCCUAUGCAUAUACUUCUUU - 33
• Evidence: experimental ; Illumina [1-2]

Mature ssc-miR-202-3p

• Accession: MIMAT0022956
• Description: Sus scrofa ssc-miR-202-3p mature miRNA
• Sequence: 49 - AGAGGUGUAGGCAUGGGAA - 67
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19917043
   MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
   "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
   "Anim Genet (2010) 41:159-168


2. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328