miRBase entry: ctr-MIR156

Stem-loop ctr-MIR156


Accession
MI0013293
Description
Citrus trifoliata ctr-MIR156 precursor miRNA
Gene family
MIPF0000008; MIR156

Literature search
5 open access papers mention ctr-MIR156
(41 sentences)

Sequence

ugaagaggaagaggaaacauaacgagagagcuacUGACAGAAGAGAGUGAGCACacgcagguaauuguauuagaaaauaucuuugcaggugcgugcucgcuccucuucugucagcgucauuuuugcaagugcuuccucacaaccccagcacgucguaacccccagcccucuuuugcucuuccuucuauca
(((((((((((((.((.......(((((.(((.(((((((((((((((((((((.(((..((((..(((((....)))))..))))..))).))))))))).))))))))))))........((((..(((((.............)))))...)))).....))).))))))).))))))).))).)))

Structure
   -   -       g  acauaac     a   ------------------------------------------------a            -         a   ag    uu     a 
uga aga ggaagag aa       gagag gcu                                                 cUGACAGAAGAG AGUGAGCAC cgc  guaa  guauu g
||| ||| ||||||| ||       ||||| |||                                                 |||||||||||| ||||||||| |||  ||||  |||||  
acu ucu ccuucuc uu       uucuc cga                                                 gacugucuucuc ucgcucgug gug  cguu  uauaa a
   a   u       g  -------     c   cccccaaugcugcacgaccccaacacuccuucgugaacguuuuuacugc            c         c   ga    uc     a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ctr-miR156

Accession MIMAT0014067
Description Citrus trifoliata ctr-miR156 mature miRNA
Sequence 35 - UGACAGAAGAGAGUGAGCAC - 54
Evidence not_experimental

References

  1. PubMed ID: 19585144
    Identification and characterization of 27 conserved microRNAs in citrus
    "Song C, Fang J, Li X, Liu H, Thomas Chao C"
    "Planta (2009) 230:671-685