Stem-loop ctr-MIR156

Accession

MI0013293

Description

Citrus trifoliata ctr-MIR156 precursor miRNA

Literature search

5 open access papers mention ctr-MIR156
(41 sentences)

Sequence

ugaagaggaagaggaaacauaacgagagagcuacUGACAGAAGAGAGUGAGCACacgcagguaauuguauuagaaaauaucuuugcaggugcgugcucgcuccucuucugucagcgucauuuuugcaagugcuuccucacaaccccagcacgucguaacccccagcccucuuuugcucuuccuucuauca
(((((((((((((.((.......(((((.(((.(((((((((((((((((((((.(((..((((..(((((....)))))..))))..))).))))))))).))))))))))))........((((..(((((.............)))))...)))).....))).))))))).))))))).))).)))

Structure

   -   -       g  acauaac     a   ------------------------------------------------a            -         a   ag    uu     a 
uga aga ggaagag aa       gagag gcu                                                 cUGACAGAAGAG AGUGAGCAC cgc  guaa  guauu g
||| ||| ||||||| ||       ||||| |||                                                 |||||||||||| ||||||||| |||  ||||  |||||  
acu ucu ccuucuc uu       uucuc cga                                                 gacugucuucuc ucgcucgug gug  cguu  uauaa a
   a   u       g  -------     c   cccccaaugcugcacgaccccaacacuccuucgugaacguuuuuacugc            c         c   ga    uc     a 

Annotation confidence Not enough data

Genome context

Unknown

Mature ctr-miR156

• Accession: MIMAT0014067
• Description: Citrus trifoliata ctr-miR156 mature miRNA
• Sequence: 35 - UGACAGAAGAGAGUGAGCAC - 54
• Evidence: not_experimental

References

1. PubMed ID: 19585144
   Identification and characterization of 27 conserved microRNAs in citrus
   "Song C, Fang J, Li X, Liu H, Thomas Chao C"
   "Planta (2009) 230:671-685