miRBase entry: osa-MIR395y

Stem-loop osa-MIR395y


Accession
MI0013351
Description
Oryza sativa osa-MIR395y precursor miRNA
Gene family
MIPF0000016; MIR395

Literature search
39 open access papers mention osa-MIR395y
(174 sentences)

Sequence

33 reads, 25 reads per million, 2 experiments
uggccccaggaguuccuugcaagcacuucacauagaacuucaguuacucucauacaacauugugauuuugagaagcuauuGUGAAGUGUUUGGGGGAACUCucggugcca
((((.((.((((((((((.((((((((((((((((...(((((((((..............)))))..))))...))).))))))))))))))))))))))).)).))))

Structure
    c  a          g             -   aac    --     ucucau 
uggc cc ggaguuccuu caagcacuucaca uag   uuca  guuac      a
|||| || |||||||||| ||||||||||||| |||   ||||  |||||       
accg gg uCUCAAGGGG GUUUGUGAAGUGu auc   gagu  uagug      c
    u  c          -             u   gaa    uu     uuacaa 


Annotation confidence Not enough data
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Genome context
Chr8: 3299815-3299924 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from osa-MIR395y
Name Accession Chromosome Start End Strand Confidence




Database links

Mature osa-miR395y

Accession MIMAT0014125
Description Oryza sativa osa-miR395y mature miRNA
Sequence 81 - GUGAAGUGUUUGGGGGAACUC - 101
Evidence not_experimental
Database links

References

  1. PubMed ID: 19951405
    Plant polycistronic precursors containing non-homologous microRNAs target transcripts encoding functionally related proteins
    Merchan F, Boualem A, Crespi M, Frugier F
    Genome Biol (2009) 10:R136