miRBase entry: api-mir-137

Stem-loop api-mir-137


Accession
MI0013352
Description
Acyrthosiphon pisum api-mir-137 precursor miRNA
Gene family
MIPF0000106; mir-137

Literature search
1 open access papers mention api-mir-137
(1 sentences)

Sequence

aacuugguuggccccgcguauucuugggacauaacacauauuuaagacuguUAUUGCUUGAGAAUACACGUAGuugacaagu
.(((((.(((((..((.(((((((((((..((((((............))))))..))))))))))).))..))))))))))

Structure
a     g     cc  c           ac      cauau 
 acuug uuggc  cg guauucuuggg  auaaca     u
 ||||| |||||  || |||||||||||  ||||||      
 ugaac aguuG  GC CAUAAGAGUUC  UAUugu     u
-     -     AU  A           GU      cagaa 


Annotation confidence Not enough data
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Genome context
GL349951.1: 311432-311513 [+]

Database links

Mature api-miR-137

Accession MIMAT0014126
Description Acyrthosiphon pisum api-miR-137 mature miRNA
Sequence 52 - UAUUGCUUGAGAAUACACGUAG - 73
Evidence experimental
Illumina [2]

References

  1. Computational identification of microRNA homologs from Acyrthosiphon pisum (pea aphid)
    "Sathyamurthy G, Swamy NR"
    J Comp Intell Bioinf (2009) 2:109-119

  2. PubMed ID: 20444247
    Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum
    Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Méreau A, Nicolas J, Tagu D, Jaubert-Possamai S
    BMC Genomics (2010) 11:281