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miRBase |
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Stem-loop sequence aae-mir-34 |
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Accession | MI0013456 (change log) | |||||
Description | Aedes aegypti miR-34 stem-loop | |||||
Gene family | MIPF0000039; mir-34 | |||||
Literature search |
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5 open access papers mention aae-mir-34 | |||||
Stem-loop |
caa aua ua u u c uagaacu ggg - u 5' ggca cgc uggcag gugg uag ugguugug uu gggcuuccgug gcgu c |||| ||| |||||| |||| ||| |||||||| || ||||||||||| |||| 3' ccgu gcg gccguc cgcc auc accaacac ag cucgggggcac cgcg g gga gga cc c u - -----uu --a a c |
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Deep sequencing |
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Confidence |
Annotation confidence: high
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Comments |
This miRNA was identified independently in Aedes aegypti [1] and in the closely related Aedes albopictus, for which there was no genome sequence [2]. The latter reads were therefore also mapped to the Aedes aegypti genome [2]. |
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Genome context |
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Clustered miRNAs |
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Database links |
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Mature sequence aae-miR-34-5p |
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Accession | MIMAT0014245 |
Previous IDs | aae-miR-34 |
Sequence |
16 - uggcagugugguuagcugguug - 37 |
Deep sequencing | 937694 reads, 2 experiments |
Evidence | experimental; 454 [1], Illumina [2] |
Mature sequence aae-miR-34-3p |
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Accession | MIMAT0014246 |
Previous IDs | aae-miR-34* |
Sequence |
94 - caaccacuauccgcccugccgcc - 116 |
Deep sequencing | 1228 reads, 2 experiments |
Evidence | experimental; Illumina [2] |
References |
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1 | |
2 |
PMID:20167119
"Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus"
BMC Genomics. 11:119(2010).
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