Stem-loop aae-mir-1890

Accession

MI0013457

Description

Aedes aegypti aae-mir-1890 precursor miRNA

Gene family

MIPF0000848; mir-1890

Literature search

4 open access papers mention aae-mir-1890
(7 sentences)

Sequence

3270 reads, 167 reads per million, 2 experiments

aucgacauacggcuagagcuaauuggagaguucuugaauaguguugugaaccuucaUGAAAUCUUUGAUUAGGUCUGGucguggug
....((.((((((((((.(((((((((((.(((.((((..((.......)).)))).))).))))))))))).)))))))))))).

Structure

aucg  a          g           g   u    ua  gu 
    ac uacggcuaga cuaauuggaga uuc ugaa  gu  u
    || |||||||||| ||||||||||| ||| ||||  ||  g
    ug gugcuGGUCU GAUUAGUUUCU AAG acuu  ca  u
---g  -          G           A   U    -c  ag 

Annotation confidence Not enough data

Comments

This miRNA was identified independently in Aedes aegypti [1] and in the closely related Aedes albopictus, for which there was no genome sequence [2]. The latter reads were therefore also mapped to the Aedes aegypti genome [2].

Genome context

supercont1.204: 1733300-1733385 [+]

Mature aae-miR-1890

• Accession: MIMAT0014247
• Description: Aedes aegypti aae-miR-1890 mature miRNA
• Sequence: 57 - UGAAAUCUUUGAUUAGGUCUGG - 78
• Evidence: experimental ; 454 [1], Illumina [2]

References

1. PubMed ID: 19961592
   Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs
   Li S, Mead EA, Liang S, Tu Z
   BMC Genomics (2009) 10:581


2. PubMed ID: 20167119
   Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus
   Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR
   BMC Genomics (2010) 11:119