miRBase entry: aae-mir-13

Stem-loop aae-mir-13


Accession
MI0013463
Description
Aedes aegypti aae-mir-13 precursor miRNA
Gene family
MIPF0000049; mir-2


Sequence

14788 reads, 756 reads per million, 2 experiments
gucgugaucggaUCGUAAAAAUGGUUGUGCUGUGuuguuacgcucgaaauucaUAUCACAGCCAUUUUGACGAGUUcgauccug
...(.(((((((((((.((((((((((((.((((..(((........))).)))).)))))))))))).)))).))))))))..

Structure
guc u       -    A            C    uu   acg 
   g gaucgga UCGU AAAAUGGUUGUG UGUG  guu   c
   | ||||||| |||| |||||||||||| ||||  |||    
   c cuagcUU AGCA UUUUACCGACAC AUac  uaa   u
-gu -       G    G            U    -u   agc 


Annotation confidence High
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Comments
This miRNA was identified independently in Aedes aegypti [1] and in the closely related Aedes albopictus, for which there was no genome sequence [2]. The latter reads were therefore also mapped to the Aedes aegypti genome [2].

Genome context
supercont1.268: 888736-888819 [-]
Clustered miRNAs
4 other miRNAs are < 10 kb from aae-mir-13
Name Accession Chromosome Start End Strand Confidence




Database links

Mature aae-miR-13-5p

Accession MIMAT0014255
Description Aedes aegypti aae-miR-13-5p mature miRNA
Sequence 13 - UCGUAAAAAUGGUUGUGCUGUG - 34
Evidence experimental
Illumina [2]

Mature aae-miR-13-3p

Accession MIMAT0014256
Description Aedes aegypti aae-miR-13-3p mature miRNA
Sequence 54 - UAUCACAGCCAUUUUGACGAGUU - 76
Evidence experimental
454 [1], Illumina [2]

References

  1. PubMed ID: 19961592
    Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs
    Li S, Mead EA, Liang S, Tu Z
    BMC Genomics (2009) 10:581

  2. PubMed ID: 20167119
    Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus
    Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR
    BMC Genomics (2010) 11:119