Stem-loop sequence aae-mir-iab-4-2

Accession MI0013531
Description Aedes aegypti miR-iab-4-2 stem-loop
Gene family MIPF0000151; mir-iab-4
Stem-loop 
     a  -a            u    c   ag  c 
gcuuc ug  acguauacugaa guau cug  ug u
||||| ||  |||||||||||| |||| |||  || a
cggag ac  ugcauaugacuu caua ggc  au u
     g  aa            c    u   cu  c
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Comments

This miRNA was identified independently in Aedes aegypti [1] and in the closely related Aedes albopictus, for which there was no genome sequence [2]. The latter reads were therefore also mapped to the Aedes aegypti genome [2].

Genome context
Coordinates (AaegL1) Overlapping transcripts
supercont1.708: 50256-50329 [+]
intergenic

Mature sequence aae-miR-iab-4-5p

Accession MIMAT0014278
Sequence

10 -  

acguauacugaauguauccuga

 - 31

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Evidence experimental; 454 [1], Solexa [2]

Mature sequence aae-miR-iab-4-3p

Accession MIMAT0016977
Sequence

44 -  

cgguauaccuucaguauacguaac

 - 67

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Evidence experimental; 454 [1]

References

1
PMID:19961592 "Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs" Li S, Mead EA, Liang S, Tu Z BMC Genomics. 10:581(2009).
2
PMID:20167119 "Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus" Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR BMC Genomics. 11:119(2010).