miRBase entry: hsv2-mir-H9

Stem-loop hsv2-mir-H9


Accession
MI0013559
Description
Herpes Simplex Virus 2 hsv2-mir-H9 precursor miRNA


Sequence

CUCGGAGGUGGAGUCGCGGUgaaggucgucgucagagaUUCCCACCUCGGUCUCCUCCUCcgag
((((((((.(((((((.((((..((((.((....))))))..)))).))).)))).))))))))

Structure
        U    -   C    aa    g  g 
CUCGGAGG GGAG UCG GGUg  gguc uc u
|||||||| |||| ||| ||||  |||| ||  
gagcCUCC CCUC GGC CCAC  UUag ag c
        U    U   U    CC    -  a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Disease association
hsv2-mir-H9 is associated with one or more human diseases in the Human microRNA Disease Database
Disease Description Category PubMed ID


Database links

Mature hsv2-miR-H9-5p

Accession MIMAT0015376
Description Herpes Simplex Virus 2 hsv2-miR-H9-5p mature miRNA
Sequence 1 - CUCGGAGGUGGAGUCGCGGU - 20
Evidence experimental
Illumina [2]

Mature hsv2-miR-H9-3p

Accession MIMAT0014352
Description Herpes Simplex Virus 2 hsv2-miR-H9-3p mature miRNA
Sequence 39 - UUCCCACCUCGGUCUCCUCCUC - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20181707
    Numerous conserved and divergent microRNAs expressed by herpes simplex viruses 1 and 2
    "Jurak I, Kramer MF, Mellor JC, van Lint AL, Roth FP, Knipe DM, Coen DM"
    "J Virol (2010) 84:4659-4672

  2. PubMed ID: 19889786
    Identification of viral microRNAs expressed in human sacral ganglia latently infected with herpes simplex virus 2
    "Umbach JL, Wang K, Tang S, Krause PR, Mont EK, Cohen JI, Cullen BR"
    "J Virol (2010) 84:1189-1192