Stem-loop sequence cqu-mir-305

Accession MI0013582
Description Culex quinquefasciatus miR-305 stem-loop
Gene family MIPF0000158; mir-305
Stem-loop 
aa     -     cu u         u  g     cu   ugcu 
  uguca caugu  a uguacuuca ca gugcu  ggu    u
  ||||| |||||  | ||||||||| || |||||  |||     
  acagu gugua  u acaugaggu gu cacgg  cca    u
ug     c     au c         u  a     -c   uagc
Get sequence
Deep sequencing
17 reads, 1 experiments
Genome context
Coordinates (CpipJ1) Overlapping transcripts
supercont3.291: 339120-339207 [+]
intergenic
Clustered miRNAs
< 10kb from cqu-mir-305
cqu-mir-275 supercont3.291: 329754-329854 [+]
cqu-mir-305 supercont3.291: 339120-339207 [+]

Mature sequence cqu-miR-305-5p

Accession MIMAT0014382
Previous IDs cqu-miR-305
Sequence

15 -  

auuguacuucaucaggugcucu

 - 36

Get sequence
Deep sequencing 16 reads, 1 experiments
Evidence experimental; Solexa [1]

Mature sequence cqu-miR-305-3p

Accession MIMAT0014383
Previous IDs cqu-miR-305*
Sequence

53 -  

cggcacauguuggaguacac

 - 72

Get sequence
Deep sequencing 1 reads, 1 experiments
Evidence experimental; Solexa [1]

References

1
PMID:20167119 "Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus" Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR BMC Genomics. 11:119(2010).