Stem-loop sequence cqu-mir-8

Accession

MI0013602 (change log)

Description

Culex quinquefasciatus miR-8 stem-loop

Gene family

MIPF0000019; mir-8

Literature search

2 open access papers mention cqu-mir-8
(11 sentences)

Stem-loop

   guc  uu -       -   g     c      --    u 
5'    ug  c acaucuu acc ggcag auuaga  uauu u
      ||  | ||||||| ||| ||||| ||||||  |||| u
3'    gc  g uguagaa ugg cuguc uaaucu  auaa u
   --a  cu c       a   a     a      uc    a 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (CpipJ1): supercont3.40: 815858-815934 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0013602

Mature sequence cqu-miR-8-5p

• Accession: MIMAT0014408
• Previous IDs: cqu-miR-8*
• Sequence: 10 - caucuuaccgggcagcauuaga - 31
• Evidence: experimental; Illumina [1]

Mature sequence cqu-miR-8-3p

• Accession: MIMAT0014409
• Previous IDs: cqu-miR-8
• Sequence: 49 - uaauacugucagguaaagaugu - 70
• Evidence: experimental; Illumina [1]

References

1. PMID:20167119 "Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus" Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR BMC Genomics. 11:119(2010).