Stem-loop sequence cqu-mir-2952

Accession MI0013624
Description Culex quinquefasciatus miR-2952 stem-loop
Stem-loop 
-ga   a      c     g       --   g 
   ucc caguca ggcug uacugca  uug c
   ||| |||||| ||||| |||||||  |||  
   ggg gucagu ccggc augaugu  agc u
cuc   a      a     -       cu   a
Get sequence
Deep sequencing
2195 reads, 1 experiments
Genome context
Coordinates (CpipJ1) Overlapping transcripts
supercont3.5: 753920-753983 [-]
intergenic
Clustered miRNAs
< 10kb from cqu-mir-2952
cqu-mir-2952 supercont3.5: 753920-753983 [-]
cqu-mir-2941-2 supercont3.5: 753788-753868 [-]
cqu-mir-2941-1 supercont3.5: 753640-753706 [-]

Mature sequence cqu-miR-2952

Accession MIMAT0014436
Sequence

41 -  

uaguacggccaugacugagggc

 - 62

Get sequence
Deep sequencing 2195 reads, 1 experiments
Evidence experimental; Solexa [1]

References

1
PMID:20167119 "Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus" Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR BMC Genomics. 11:119(2010).