Stem-loop cqu-mir-998

Accession

MI0013632

Description

Culex quinquefasciatus cqu-mir-998 precursor miRNA

Gene family

MIPF0000952; mir-998

Sequence

acagauguuggccaauuccgggacugaacucucgugggucugcagugcuuuucguuggaacuugUAGCACCAUGAGAUUCAGCuccggugcuggucuuguuucg
...((....(((((...(((((.(((((.((((((((..(((((((.((.......)).)).)))))..))))))))))))).)))))...))))).....)).

Structure

aca  -uguu     auu     a     c        gu     -  g  uu 
   ga     ggcca   ccggg cugaa ucucgugg  cugca gu cu  u
   ||     |||||   ||||| ||||| ||||||||  ||||| || ||  c
   cu     cuggu   ggccu GACUU AGAGUACC  GAUgu ca gg  g
--g  uuguu     cgu     C     -        AC     u  a  uu 

Annotation confidence Not enough data

Genome context

supercont3.153: 639506-639609 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cqu-mir-998

Mature cqu-miR-998

• Accession: MIMAT0014445
• Description: Culex quinquefasciatus cqu-miR-998 mature miRNA
• Sequence: 65 - UAGCACCAUGAGAUUCAGC - 83
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20167119
   Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus
   Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR
   BMC Genomics (2010) 11:119