Stem-loop tgu-mir-2978

Accession

MI0013676

Description

Taeniopygia guttata tgu-mir-2978 precursor miRNA

Literature search

1 open access papers mention tgu-mir-2978
(2 sentences)

Sequence

ggucuGUGGGCUGGGGAAGGGCUGCUGGGUgguaccagccagccucacccgugcccgagagc
(.(((.(((((..(((..((((((((((......)))).))))))..)))..)))))))).)

Structure

 g   G     UG   AA      -    GU 
g ucu UGGGC  GGG  GGGCUG CUGG  g
| ||| |||||  |||  |||||| ||||   
c aga gcccg  ccc  uccgac gacc  g
 g   -     ug   ac      c    au 

Annotation confidence Not enough data

Genome context

chr18: 7548428-7548489 [-]

Mature tgu-miR-2978

• Accession: MIMAT0014488
• Description: Taeniopygia guttata tgu-miR-2978 mature miRNA
• Sequence: 6 - GUGGGCUGGGGAAGGGCUGCUGGGU - 30
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 20360741
   The genome of a songbird
   "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
   "Nature (2010) 464:757-762


2. PubMed ID: 23268654
   Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
   Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
   BMC Genomics (2012) 13:727