Stem-loop tgu-mir-129

Accession

MI0013688

Description

Taeniopygia guttata tgu-mir-129 precursor miRNA

Gene family

MIPF0000073; mir-129

Literature search

3 open access papers mention tgu-mir-129
(11 sentences)

Sequence

cuucgcgaauCUUUUUGCGGUCUGGGCUUGCuguacauaacuaccuacccgggAAGCCCUUACCCCAAAAAGCAUucgcggag
(((((((((((((((((.(((..((((((.(((................))).))))))..))).))))))).))))))))))

Structure

          -       C   CU      G   uacauaa 
cuucgcgaau CUUUUUG GGU  GGGCUU Cug       c
|||||||||| ||||||| |||  |||||| |||        
gaggcgcuUA GAAAAAC CCA  CCCGAA ggc       u
          C       C   UU      g   ccaucca 

Annotation confidence Not enough data

Genome context

chr5: 19791223-19791305 [+]

Mature tgu-miR-129-5p

• Accession: MIMAT0014625
• Description: Taeniopygia guttata tgu-miR-129-5p mature miRNA
• Sequence: 11 - CUUUUUGCGGUCUGGGCUUGC - 31
• Evidence: experimental ; 454 [1], Illumina [1-2]

Mature tgu-miR-129-3p

• Accession: MIMAT0014499
• Description: Taeniopygia guttata tgu-miR-129-3p mature miRNA
• Sequence: 54 - AAGCCCUUACCCCAAAAAGCAU - 75
• Evidence: experimental ; 454 [1], Illumina [1-2]

References

1. PubMed ID: 20360741
   The genome of a songbird
   "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
   "Nature (2010) 464:757-762


2. PubMed ID: 23268654
   Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
   Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
   BMC Genomics (2012) 13:727