Stem-loop sequence tgu-mir-100-1

Accession MI0013708
Description Taeniopygia guttata miR-100-1 stem-loop
Gene family MIPF0000025; mir-99
Stem-loop 
-----------------------------------u   -      a   cg     c   a      cuca 
                                    gcu gccaca acc  uagau cga cuugug    u
                                    ||| |||||| |||  ||||| ||| ||||||    a
                                    cgg cggugu ugg  aucua guu gaacac    u
ccccuucacgucgucguggggccccacgagaacggu   u      c   au     u   c      accu
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Genome context
Coordinates (taeGlu3.2.4) Overlapping transcripts
chr24: 3146829-3146939 [-]
sense
Clustered miRNAs
< 10kb from tgu-mir-100-1
tgu-mir-100-2 chr24: 3149999-3150109 [-]
tgu-mir-100-1 chr24: 3146829-3146939 [-]
tgu-let-7a-2 chr24: 3137431-3137522 [-]

Mature sequence tgu-miR-100-5p

Accession MIMAT0014511
Previous IDs tgu-miR-100
Sequence

11 -  

aacccguagauccgaacuugu

 - 31

Get sequence
Evidence experimental; 454 [1], Solexa [1]

Mature sequence tgu-miR-100-3p

Accession MIMAT0014633
Previous IDs tgu-miR-100*
Sequence

45 -  

acaagcuuguaucuauaggucug

 - 67

Get sequence
Evidence experimental; 454 [1], Solexa [1]

References

1
PMID:20360741 "The genome of a songbird" Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li Nature. 464:757-762(2010).