Stem-loop sequence tgu-let-7a-1

AccessionMI0013722 (change log)
DescriptionTaeniopygia guttata let-7a-1 stem-loop
Gene family MIPF0000002; let-7
Literature search

2 open access papers mention tgu-let-7a-1
(3 sentences)

Stem-loop
   --  -   ug   u   gu                ---------u        
5'   uc cuu  ggg gag  aguagguuguauaguu          uagggcu 
     || |||  ||| |||  ||||||||||||||||          |||||| a
3'   gg gaa  ccu uuc  ucaucuaacauaucaa          gucccgu 
   uc  u   gu   -   ug                uagacugucc        
Get sequence
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (taeGlu3.2.4) Overlapping transcripts
chr1A: 61564945-61565036 [-]
sense
ENSTGUT00000018661 ; tgu-let-7a-1-201; exon 1
Clustered miRNAs
< 10kb from tgu-let-7a-1
tgu-let-7a-1chr1A: 61564945-61565036 [-]
tgu-let-7bchr1A: 61564105-61564196 [-]
Database links

Mature sequence tgu-let-7a-5p

Accession MIMAT0014519
Previous IDstgu-let-7a
Sequence

11 - 

ugagguaguagguuguauaguu

 - 32

Get sequence
Evidence experimental; 454 [1], Illumina [1-2]

Mature sequence tgu-let-7a-1-3p

Accession MIMAT0031085
Sequence

61 - 

cuauacaaucuacugucuuucc

 - 82

Get sequence
Evidence experimental; Illumina [2]

References

1
PMID:20360741 "The genome of a songbird" Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li Nature. 464:757-762(2010).
2
PMID:23268654 "Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression" Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X BMC Genomics. 13:727(2012).