Stem-loop tgu-mir-122

Accession

MI0013742

Description

Taeniopygia guttata tgu-mir-122 precursor miRNA

Gene family

MIPF0000095; mir-122

Literature search

1 open access papers mention tgu-mir-122
(3 sentences)

Sequence

cccagagcugUGGAGUGUGACAAUGGUGUUUGuguccaucuaucaAACGCCAUUAUCACACUAAAUaguucc
....(((((((..(((((((.(((((((((((...........))))))))))).)))))))..))))))).

Structure

ccca       GG       C           uguc 
    gagcugU  AGUGUGA AAUGGUGUUUG    c
    |||||||  ||||||| |||||||||||    a
    cuugaUA  UCACACU UUACCGCAAac    u
---c       AA       A           uauc 

Annotation confidence Not enough data

Genome context

chrZ_random: 328161-328232 [+]

Mature tgu-miR-122-5p

• Accession: MIMAT0014529
• Description: Taeniopygia guttata tgu-miR-122-5p mature miRNA
• Sequence: 11 - UGGAGUGUGACAAUGGUGUUUG - 32
• Evidence: experimental ; 454 [1], Illumina [1-2]

Mature tgu-miR-122-3p

• Accession: MIMAT0026987
• Description: Taeniopygia guttata tgu-miR-122-3p mature miRNA
• Sequence: 46 - AACGCCAUUAUCACACUAAAU - 66
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 20360741
   The genome of a songbird
   "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
   "Nature (2010) 464:757-762


2. PubMed ID: 23268654
   Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
   Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
   BMC Genomics (2012) 13:727