miRBase entry: tgu-mir-2992

Stem-loop tgu-mir-2992


Accession
MI0013765
Description
Taeniopygia guttata tgu-mir-2992 precursor miRNA

Literature search
1 open access papers mention tgu-mir-2992
(1 sentences)

Sequence

ggcggcagggCCCCGGCAGGACAAAGUCUCUcuguggagggcugcucagagccggcuuuguccugccgggc
...........(((((((((((((((((.(((((.(........).)))))..))))))))))))))))).

Structure
ggcggcagggC                 -U     u gag 
           CCCGGCAGGACAAAGUC  CUcug g   g
           |||||||||||||||||  ||||| |    
           gggccguccuguuucgg  gagac c   g
----------c                 cc     u guc 


Annotation confidence Not enough data
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Genome context
chrZ: 57612703-57612773 [+]

Database links

Mature tgu-miR-2992

Accession MIMAT0014549
Description Taeniopygia guttata tgu-miR-2992 mature miRNA
Sequence 11 - CCCCGGCAGGACAAAGUCUCU - 31
Evidence experimental
454 [1], Illumina [2]

References

  1. PubMed ID: 20360741
    The genome of a songbird
    "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
    "Nature (2010) 464:757-762

  2. PubMed ID: 23268654
    Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
    Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
    BMC Genomics (2012) 13:727