Stem-loop tgu-mir-219a

Accession

MI0013789

Description

Taeniopygia guttata tgu-mir-219a precursor miRNA

Literature search

1 open access papers mention tgu-mir-219a
(1 sentences)

Sequence

ucuccgcuccUGAUUGUCCAAACGCAAUUCUUgugcgauggagccguacgaaccaagaauugugucuggaca
..............((((((.((((((((((((..(((((....))).))...)))))))))))).))))))

Structure

ucuccgcuccUGAU      A            -ug  -   g 
              UGUCCA ACGCAAUUCUUg   cg aug a
              |||||| ||||||||||||   || |||  
              acaggu uguguuaagaac   gc ugc g
--------------      c            caa  a   c 

Annotation confidence Low

Genome context

chr17: 5454954-5455025 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from tgu-mir-219a

Mature tgu-miR-219a

• Accession: MIMAT0014568
• Description: Taeniopygia guttata tgu-miR-219a mature miRNA
• Sequence: 11 - UGAUUGUCCAAACGCAAUUCUU - 32
• Evidence: experimental ; 454 [1], Illumina [1]

References

1. PubMed ID: 20360741
   The genome of a songbird
   "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
   "Nature (2010) 464:757-762