miRBase entry: tgu-mir-18a

Stem-loop tgu-mir-18a


Accession
MI0013815
Description
Taeniopygia guttata tgu-mir-18a precursor miRNA
Gene family
MIPF0000001; mir-17


Sequence

cuuuuuguacUAAGGUGCAUCUAGUGCAGAUAgugaaguagauuagcaucuacugcccuaagugcuccuucu
...........((((.((((.(((.((((.(((((..(.....)..)).))))))).))).)))).))))..

Structure
cuuuuuguacU    U    C   U    A   -  aa u 
           AAGG GCAU UAG GCAG UAg ug  g a
           |||| |||| ||| |||| ||| ||  | g
           uucc cgug auc cguc auc ac  u a
---------uc    u    a   c    -   u  ga u 


Annotation confidence Not enough data
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Genome context
chr1: 43202937-43203008 [-]
Clustered miRNAs
5 other miRNAs are < 10 kb from tgu-mir-18a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tgu-miR-18a

Accession MIMAT0014587
Description Taeniopygia guttata tgu-miR-18a mature miRNA
Sequence 11 - UAAGGUGCAUCUAGUGCAGAUA - 32
Evidence experimental
454 [1], Illumina [2]

References

  1. PubMed ID: 20360741
    The genome of a songbird
    "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
    "Nature (2010) 464:757-762

  2. PubMed ID: 23268654
    Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
    Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
    BMC Genomics (2012) 13:727