Stem-loop tgu-mir-34a

Accession

MI0013826

Description

Taeniopygia guttata tgu-mir-34a precursor miRNA

Gene family

MIPF0000039; mir-34

Sequence

aguguuucuuUGGCAGUGUCUUAGCUGGUUGUugugagcaauagucaaggaagcaaucagcaaguauacugc
............((((((((((.(((((((((..(((.......))).....)))))))))))).)))))))

Structure

aguguuucuuUG       -   A         ---ug   gc 
            GCAGUGU CUU GCUGGUUGU     uga  a
            ||||||| ||| |||||||||     |||  a
            cgucaua gaa cgacuaacg     acu  u
------------       u   -         aagga   ga 

Annotation confidence Not enough data

Genome context

chr21: 5249928-5249999 [+]

Mature tgu-miR-34a

• Accession: MIMAT0014598
• Description: Taeniopygia guttata tgu-miR-34a mature miRNA
• Sequence: 11 - UGGCAGUGUCUUAGCUGGUUGU - 32
• Evidence: experimental ; 454 [1], Illumina [2]

References

1. PubMed ID: 20360741
   The genome of a songbird
   "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
   "Nature (2010) 464:757-762


2. PubMed ID: 23268654
   Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
   Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
   BMC Genomics (2012) 13:727