miRBase entry: api-mir-100

Stem-loop api-mir-100


Accession
MI0013878
Description
Acyrthosiphon pisum api-mir-100 precursor miRNA
Gene family
MIPF0000033; mir-10

Literature search
3 open access papers mention api-mir-100
(11 sentences)

Sequence

ugugaaaacugaguugcuacGACCCGUAGAUCCGAACUUGUGucgcaaaguuuaguaucacaaguucguuucuagaggauacagccacucagugcacuc
.(((...(((((((.(((....((..((((..((((((((((..((........))..))))))))))..))))..))....))).))))))).)))..

Structure
-u   aaa       u   acGA  CG    UC          uc  aaa 
  gug   acugagu gcu    CC  UAGA  CGAACUUGUG  gc   g
  |||   ||||||| |||    ||  ||||  ||||||||||  ||    
  cac   ugacuca cga    gg  aucu  gcuugaacac  ug   u
cu   --g       c   caua  ag    uu          ua  auu 


Annotation confidence Not enough data
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Genome context
GL350266.1: 135163-135261 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from api-mir-100
Name Accession Chromosome Start End Strand Confidence




Database links

Mature api-miR-100

Accession MIMAT0014687
Description Acyrthosiphon pisum api-miR-100 mature miRNA
Sequence 21 - GACCCGUAGAUCCGAACUUGUG - 42
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 20444247
    Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum
    Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Méreau A, Nicolas J, Tagu D, Jaubert-Possamai S
    BMC Genomics (2010) 11:281