Stem-loop hsv1-mir-H14

Accession

MI0013888

Description

Herpes Simplex Virus 1 hsv1-mir-H14 precursor miRNA

Sequence

gccgugugccccAGUCGCACUCGUCCCUGGCUCAGGccgcgaaccaagaacagagUCUGUGCCGGGCGCGUGCGACgguggcgcgcggc
((((((((((((.(((((((.((.(((.(((.((((((..............).))))).)))))))).))))))))).))))))))))

Structure

          -  A       U  U   U   U     - gcgaac 
gccgugugcc cc GUCGCAC CG CCC GGC CAGGc c      c
|||||||||| || ||||||| || ||| ||| ||||| |       
cggcgcgcgg gg CAGCGUG GC GGG CCG GUCUg g      a
          u  -       C  -   -   U     a acaaga 

Annotation confidence Low

Genome context

Unknown

Mature hsv1-miR-H14-5p

• Accession: MIMAT0014691
• Description: Herpes Simplex Virus 1 hsv1-miR-H14-5p mature miRNA
• Sequence: 13 - AGUCGCACUCGUCCCUGGCUCAGG - 36
• Evidence: experimental ; Illumina [1]

Mature hsv1-miR-H14-3p

• Accession: MIMAT0014692
• Description: Herpes Simplex Virus 1 hsv1-miR-H14-3p mature miRNA
• Sequence: 56 - UCUGUGCCGGGCGCGUGCGAC - 76
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20181707
   Numerous conserved and divergent microRNAs expressed by herpes simplex viruses 1 and 2
   "Jurak I, Kramer MF, Mellor JC, van Lint AL, Roth FP, Knipe DM, Coen DM"
   "J Virol (2010) 84:4659-4672