Stem-loop sequence api-mir-2c

Accession

MI0013929 (change log)

Description

Acyrthosiphon pisum miR-2c stem-loop

Gene family

MIPF0000049; mir-2

Literature search

3 open access papers mention api-mir-2c
(7 sentences)

Stem-loop

   ---c         g      c    agugu   uu 
5'     cgucaaagc ggcugu guag     uca  u
       ||||||||| |||||| ||||     |||  u
3'     guaguuucg ccgaca uauc     agu  c
   acga         a      c    -----   uu 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Acyr_2.0; GCA_000142985.2): GL349742.1: 367625-367689 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from api-mir-2c

• api-mir-71: GL349742.1: 367510-367571 [+]
• api-mir-2c: GL349742.1: 367625-367689 [+]
• api-mir-13a: GL349742.1: 367742-367802 [+]
• api-mir-2a: GL349742.1: 368362-368423 [+]
• api-mir-2b: GL349742.1: 368487-368567 [+]

Database links

• EntrezGene:Mir2c
• miRBase Tracker:MI0013929

Mature sequence api-miR-2c

• Accession: MIMAT0014728
• Sequence: 1 - ccgucaaagcgggcugucgua - 21
• Evidence: experimental; Illumina [1]

References

1. PMID:20444247 "Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum" Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Mereau A, Nicolas J, Tagu D, Jaubert-Possamai S BMC Genomics. 11:281(2010).