Stem-loop sequence hsa-mir-3151

Accession

MI0014178 (change log)

Symbol

HGNC:MIR3151

Description

Homo sapiens miR-3151 stem-loop

Gene family

MIPF0001394; mir-3151

Literature search

6 open access papers mention hsa-mir-3151
(22 sentences)

Stem-loop

                  g aa           -----    c 
5' ggggugauggguggg c  ugggaucaggu     gccu a
   ||||||||||||||| |  |||||||||||     ||||  
3' ccccacuguccaccc g  acccuagucca     cggg a
                  - ac           cccua    a 

Deep sequencing

194 reads, 0 reads per million, 22 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr8: 103154614-103154689 [+]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:MIR3151
• HGNC:MIR3151
• RNAcentral:URS000075C6C0_9606
• miRBase Tracker:MI0014178

Mature sequence hsa-miR-3151-5p

• Accession: MIMAT0015024
• Sequence: 10 - gguggggcaaugggaucaggu - 30
• Deep sequencing: 183 reads, 19 experiments
• Evidence: experimental; Illumina [1-4]
• Database links:
  • RNAcentral:URS00002004E0_9606
• Predicted targets:
  • TargetScanVert:hsa-miR-3151-5p
  • miRDB:hsa-miR-3151-5p
  • microrna.org:hsa-miR-3151-5p

Mature sequence hsa-miR-3151-3p

• Accession: MIMAT0027026
• Sequence: 49 - ccugaucccacagcccaccu - 68
• Deep sequencing: 10 reads, 9 experiments
• Evidence: experimental; Illumina [4]
• Predicted targets:
  • TargetScanVert:hsa-miR-3151-3p
  • miRDB:hsa-miR-3151-3p

References

1. PMID:20300190 "Characterization of the Melanoma miRNAome by Deep Sequencing" Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons PG, Schmidt C, Sturm RA, Hayward NK PLoS One. 5:e9685(2010).
2. PMID:21606961 "Discovery of new microRNAs by small RNAome deep sequencing in childhood acute lymphoblastic leukemia" Schotte D, Akbari Moqadam F, Lange-Turenhout EA, Chen C, van Ijcken WF, Pieters R, den Boer ML Leukemia. 25:1389-1399(2011).
3. PMID:22454130 "Transcription factors are targeted by differentially expressed miRNAs in primates" Dannemann M, Prufer K, Lizano E, Nickel B, Burbano HA, Kelso J Genome Biol Evol. 4:552-564(2012).
4. PMID:23034410 "Birth and expression evolution of mammalian microRNA genes" Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H Genome Res. 23:34-45(2013).