miRBase entry: ppy-mir-496

Stem-loop ppy-mir-496

Accession

MI0014969

Description

Pongo pygmaeus ppy-mir-496 precursor miRNA

Gene family

MIPF0000018; mir-154

Sequence

cccaagucagguacucgaauggagguuguccaugguguguucauuuuauuuaugaUGAGUAUUACAUGGCCAAUCUCcuuuugguacucaauucuucuuggg
((((((...(((((.((((.((((((((.(((((..(((((((((........)))))))))..))))).)))))))).)))))))))........))))))

Structure

      -----uca     u    u        u     gu         uua 
cccaag        gguac cgaa ggagguug ccaug  guguucauu   u
||||||        ||||| |||| |||||||| |||||  |||||||||    
ggguuc        ucaug guuu cCUCUAAC GGUAC  UAUGAGUag   u
      uucuuaac     -    u        C     AU         uau

Annotation confidence Not enough data

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Genome context

chr14: 102623301-102623402 [+]

Clustered miRNAs

14 other miRNAs are < 10 kb from ppy-mir-496

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppy-miR-496

Accession	MIMAT0015917
Description	Pongo pygmaeus ppy-miR-496 mature miRNA
Sequence	56 - UGAGUAUUACAUGGCCAAUCUC - 77
Evidence	not_experimental

References

PubMed ID: 20214803
Genome-wide comparative analysis of microRNAs in three non-human primates
Brameier M
BMC Res Notes (2010) 3:64