Stem-loop ppy-mir-541

Accession

MI0015039

Description

Pongo pygmaeus ppy-mir-541 precursor miRNA

Gene family

MIPF0000213; mir-541

Sequence

acgucagggaaaggauucugcugucggucccacuccaaaguuuacagaaugggUGGUGGGCACAGAAUCCGGACUcugcuugug
(((.(((((...((((((((.((((.(..((((.(((............)))))))).))))))))))))...)))))..))).

Structure

-   -u     aaa        c    g uc    u   aaguu 
 acg  caggg   ggauucug uguc g  ccac cca     u
 |||  |||||   |||||||| |||| |  |||| |||      
 ugu  gucUC   CCUAAGAC ACGG U  GGUg ggu     a
g   uc     AGG        -    G --    -   aagac 

Annotation confidence Not enough data

Genome context

chr14: 102627217-102627300 [+]

Clustered miRNAs

11 other miRNAs are < 10 kb from ppy-mir-541

Mature ppy-miR-541

• Accession: MIMAT0015990
• Description: Pongo pygmaeus ppy-miR-541 mature miRNA
• Sequence: 54 - UGGUGGGCACAGAAUCCGGACU - 75
• Evidence: not_experimental

References

1. PubMed ID: 20214803
   Genome-wide comparative analysis of microRNAs in three non-human primates
   Brameier M
   BMC Res Notes (2010) 3:64