Stem-loop gga-mir-3539

Accession

MI0015393

Description

Gallus gallus gga-mir-3539 precursor miRNA

Sequence

1 reads, 0 reads per million, 1 experiments

cuccuugCAGAGGAAGACUGAUGCUAGUUauuuguuucccacugacugccucauguccuccucuaggggag
((((((..((((((.((((((.((.(((((..((.....)).))))))).))).))).)))))).))))))

Structure

      gC      A   -   U  U     uu  u 
cuccuu  AGAGGA GAC UGA GC AGUUa  ug u
||||||  |||||| ||| ||| || |||||  || u
gagggg  ucuccu cug acu cg ucagu  ac c
      -a      c   u   c  -     -c  c 

Annotation confidence Not enough data

Genome context

chr1: 80759493-80759563 [+]

Mature gga-miR-3539

• Accession: MIMAT0016390
• Description: Gallus gallus gga-miR-3539 mature miRNA
• Sequence: 8 - CAGAGGAAGACUGAUGCUAGUU - 29
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19891781
   Identification of differentially expressed miRNAs in chicken lung and trachea with avian influenza virus infection by a deep sequencing approach
   Wang Y, Brahmakshatriya V, Zhu H, Lupiani B, Reddy SM, Yoon BJ, Gunaratne PH, Kim JH, Chen R, Wang J, Zhou H
   BMC Genomics (2009) 10:512