miRBase entry: 19891781

Identification of differentially expressed miRNAs in chicken lung and trachea with avian influenza virus infection by a deep sequencing approach

PubMed ID 19891781
Authors Wang Y, Brahmakshatriya V, Zhu H, Lupiani B, Reddy SM, Yoon BJ, Gunaratne PH, Kim JH, Chen R, Wang J, Zhou H
Journal BMC Genomics
Volume 10
Pages 512

There are 155 miRNAs associated with this paper:
Name Accession RPM Chromosome Start End Strand Confidence
gga-mir-2188 MI0015374 123 chr22 2664305 2664473 - High
gga-mir-3523 MI0015375 2 chr13 9054476 9054641 - -
gga-mir-3524a MI0015376 3 chr1 105832017 105832132 - -
gga-mir-3526 MI0015377 2 chr3 15593875 15593989 + -
gga-mir-3528 MI0015379 1 chr17 8208158 8208254 + -
gga-mir-3529 MI0015380 24 chr10 13134724 13134814 + -
gga-mir-3530 MI0015381 9 chr7 25408507 25408595 + High
gga-mir-219b MI0015382 721 chr17 5485245 5485333 - -
gga-mir-3531 MI0015383 3 chr23 443912 443998 - High
gga-mir-3525 MI0015384 119 chr1 105832033 105832116 + High
gga-mir-3532 MI0015385 16 chr5 32991425 32991508 - -
gga-mir-3533 MI0015386 4 chr14 4192483 4192566 - -
gga-mir-3534 MI0015387 0 KQ759641.1 1842 1923 - -
gga-mir-3535 MI0015388 54 chr9 15324645 15324726 - -
gga-mir-3536 MI0015389 2 chr25 2139769 2139846 + -
gga-mir-3537 MI0015390 0 chr6 16941072 16941148 + -
gga-mir-3538 MI0015391 12 None None -
gga-mir-3539 MI0015393 0 chr1 80759493 80759563 + -
gga-mir-3540 MI0015394 1 chr10 11060290 11060351 + -
hsa-let-7a-1 MI0000060 46519 chr9 94175957 94176036 + High
hsa-let-7a-2 MI0000061 46265 chr11 122146522 122146593 - High
hsa-let-7a-3 MI0000062 46706 chr22 46112749 46112822 + High
hsa-let-7b MI0000063 27396 chr22 46113686 46113768 + High
hsa-let-7c MI0000064 15711 chr21 16539828 16539911 + High
hsa-let-7d MI0000065 4366 chr9 94178834 94178920 + High
hsa-let-7e MI0000066 5118 chr19 51692786 51692864 + High
hsa-let-7f-1 MI0000067 65280 chr9 94176347 94176433 + High
hsa-let-7f-2 MI0000068 65395 chrX 53557192 53557274 - High
hsa-mir-15a MI0000069 3371 chr13 50049119 50049201 - High
hsa-mir-16-1 MI0000070 10398 chr13 50048973 50049061 - High
hsa-mir-17 MI0000071 12840 chr13 91350605 91350688 + High
hsa-mir-18a MI0000072 8032 chr13 91350751 91350821 + High
hsa-mir-19a MI0000073 9302 chr13 91350891 91350972 + High
hsa-mir-19b-1 MI0000074 12712 chr13 91351192 91351278 + High
hsa-mir-19b-2 MI0000075 12558 chrX 134169671 134169766 - High
hsa-mir-20a MI0000076 6826 chr13 91351065 91351135 + High
hsa-mir-21 MI0000077 28570 chr17 59841266 59841337 + High
hsa-mir-24-1 MI0000080 2988 chr9 95086021 95086088 + High
hsa-mir-24-2 MI0000081 3119 chr19 13836287 13836359 - High
hsa-mir-92a-1 MI0000093 7474 chr13 91351314 91351391 + High
hsa-mir-92a-2 MI0000094 7101 chrX 134169538 134169612 - High
hsa-mir-106a MI0000113 2817 chrX 134170198 134170278 - High
hsa-mir-16-2 MI0000115 10575 chr3 160404745 160404825 + High
hsa-mir-181a-2 MI0000269 4211 chr9 124692442 124692551 + High
hsa-mir-181b-1 MI0000270 1441 chr1 198858873 198858982 - High
hsa-mir-181a-1 MI0000289 4186 chr1 198859044 198859153 - High
hsa-mir-221 MI0000298 5088 chrX 45746157 45746266 - High
hsa-mir-222 MI0000299 4867 chrX 45747015 45747124 - High
hsa-mir-223 MI0000300 1820 chrX 66018870 66018979 + High
hsa-let-7g MI0000433 6904 chr3 52268278 52268361 - High
hsa-let-7i MI0000434 7403 chr12 62603686 62603769 + High
hsa-mir-15b MI0000438 5285 chr3 160404588 160404685 + High
hsa-mir-23b MI0000439 4243 chr9 95085208 95085304 + -
hsa-mir-27b MI0000440 4618 chr9 95085445 95085541 + High
hsa-mir-122 MI0000442 3777 chr18 58451074 58451158 + High
hsa-mir-125b-1 MI0000446 5007 chr11 122099757 122099844 - High
hsa-mir-140 MI0000456 8526 chr16 69933081 69933180 + High
hsa-mir-125b-2 MI0000470 5102 chr21 16590237 16590325 + High
hsa-mir-136 MI0000475 338 chr14 100884702 100884783 + High
hsa-mir-146a MI0000477 1682 chr5 160485352 160485450 + High
hsa-mir-150 MI0000479 1228 chr19 49500785 49500868 - High
hsa-mir-206 MI0000490 1819 chr6 52144349 52144434 + -
hsa-mir-155 MI0000681 459 chr21 25573980 25574044 + High
hsa-mir-181b-2 MI0000683 1507 chr9 124693710 124693798 + High
hsa-mir-106b MI0000734 2518 chr7 100093993 100094074 - High
hsa-mir-302a MI0000738 362 chr4 112648183 112648251 - High
hsa-mir-34b MI0000742 437 chr11 111512938 111513021 + High
hsa-mir-34c MI0000743 1301 chr11 111513439 111513515 + High
hsa-mir-302b MI0000772 12 chr4 112648485 112648557 - -
hsa-mir-302c MI0000773 4 chr4 112648363 112648430 - -
hsa-mir-302d MI0000774 4 chr4 112648004 112648071 - -
hsa-mir-367 MI0000775 4 chr4 112647874 112647941 - -
gga-let-7i MI0001168 753 chr1 33060797 33060880 + High
gga-let-7a-3 MI0001171 73726 chr1 71291481 71291556 + High
gga-let-7b MI0001172 13203 chr1 71292310 71292394 + High
gga-let-7c MI0001174 12632 chr1 99018794 99018877 + High
gga-mir-125b-2 MI0001175 6293 chr1 99051079 99051168 + High
gga-mir-155 MI0001176 44 chr1 102485099 102485161 + -
gga-mir-222a MI0001177 415 chr1 110650030 110650127 + High
gga-mir-221 MI0001178 930 chr1 110650534 110650632 + High
gga-mir-92-1 MI0001179 1297 chr1 148023263 148023340 - High
gga-mir-19b MI0001180 125 chr1 148023376 148023462 - High
gga-mir-20a MI0001181 1777 chr1 148023499 148023596 - High
gga-mir-19a MI0001182 109 chr1 148023685 148023765 - High
gga-mir-18a MI0001183 127 chr1 148023819 148023911 - High
gga-mir-17 MI0001184 961 chr1 148023974 148024058 - High
gga-mir-16-1 MI0001185 392 chr1 169399051 169399134 - High
gga-mir-15a MI0001186 73 chr1 169399193 169399275 - -
gga-mir-1a-2 MI0001196 76776 chr2 102815860 102815944 - -
gga-mir-206 MI0001207 62 chr3 108045182 108045257 - -
gga-mir-223 MI0001208 20 chr4 249565 249664 + -
gga-mir-106 MI0001210 190 chr4 3995151 3995231 - High
gga-mir-302a MI0001211 0 chr4 57456844 57456910 + -
gga-mir-181a-1 MI0001218 15585 chr8 2005169 2005272 + High
gga-mir-181b-1 MI0001219 2028 chr8 2005358 2005446 + High
gga-mir-16-2 MI0001222 387 chr9 22276898 22276991 - High
gga-mir-15b MI0001223 27 chr9 22277073 22277163 - -
gga-mir-140 MI0001229 10668 chr11 19310301 19310395 + High
gga-let-7g MI0001230 4570 chr12 2971911 2971993 - High
gga-let-7d MI0001232 130 chr12 6091058 6091160 - High
gga-let-7f MI0001233 33796 chr12 6092103 6092189 - High
gga-let-7a-1 MI0001234 72969 chr12 6092517 6092606 - High
gga-mir-146a MI0001235 1662 chr13 7795767 7795865 - High
gga-mir-181b-2 MI0001242 2007 chr17 9983772 9983856 + High
gga-mir-181a-2 MI0001243 15346 chr17 9982132 9982222 + -
gga-mir-1a-1 MI0001247 76765 chr20 8315740 8315810 + -
gga-mir-1b MI0001254 1405 chr23 4357025 4357088 + -
gga-let-7a-2 MI0001259 72699 chr24 3343196 3343267 + High
gga-mir-34b MI0001260 299 chr24 5539134 5539217 + High
gga-mir-34c MI0001261 771 chr24 5539871 5539944 + High
gga-let-7j MI0001262 73377 chr26 1639928 1640010 - -
gga-let-7k MI0001263 40055 chr26 1640128 1640210 - High
gga-mir-23b MI0001273 268 chrZ 41649166 41649251 + High
gga-mir-27b MI0001274 1634 chrZ 41649402 41649498 + High
gga-mir-24 MI0001275 1785 chrZ 41649935 41650002 + High
gga-mir-122-1 MI0001277 771 chrZ 761121 761197 + High
gga-mir-122-2 MI0001280 771 chrW 2525186 2525262 - High
hsa-mir-429 MI0001641 318 chr1 1169005 1169087 + High
hsa-mir-449a MI0001648 127 chr5 55170532 55170622 - -
hsa-mir-146b MI0003129 1123 chr10 102436512 102436584 + High
hsa-mir-507 MI0003194 33 chrX 147230984 147231077 - -
hsa-mir-455 MI0003513 927 chr9 114209434 114209529 + -
hsa-mir-92b MI0003560 954 chr1 155195177 155195272 + High
hsa-mir-449b MI0003673 514 chr5 55170646 55170742 - High
gga-mir-146b MI0003695 4181 chr6 23143386 23143490 + High
gga-mir-302b MI0003700 0 chr4 57456279 57456350 + -
gga-mir-302c MI0003701 0 chr4 57456541 57456605 + -
gga-mir-302d MI0003702 0 chr4 57457179 57457247 + -
gga-mir-455 MI0003707 57 chr17 5239491 5239576 + -
gga-mir-367 MI0003712 0 chr4 57457315 57457387 + -
gga-mir-429 MI0003714 421 chr21 2589432 2589515 - High
gga-mir-449a MI0003715 3 chrZ 16702946 16703031 - -
hsa-mir-449c MI0003823 35 chr5 55172262 55172353 - High
gga-mir-21 MI0004994 34970 chr19 7376247 7376343 + High
gga-mir-1458 MI0007063 0 chr9 10673202 10673311 + -
gga-mir-1576 MI0007302 0 chr13 18027771 18027865 + -
gga-mir-1612 MI0007340 0 chr9 4975873 4975956 + -
gga-mir-1636 MI0007366 0 chr15 4735876 4735963 + -
gga-mir-449c MI0007445 1 chrZ 16704099 16704170 - -
gga-mir-1711 MI0007448 0 chr12 16440167 16440234 - -
gga-mir-1729 MI0007468 39 chr15 762734 762804 + High
gga-mir-1798 MI0007542 1 chr20 9880673 9880768 - -
gga-mir-122b MI0007547 0 chr4 59089899 59089975 - -
gga-mir-1811 MI0007556 0 chr4 57456663 57456743 + -
gga-mir-146c MI0007561 28908 chr4 89315822 89315950 - High
gga-mir-15c MI0007562 37 chr4 4071811 4071886 - -
gga-mir-449b MI0007566 3 chrZ 16703096 16703189 - -
gga-mir-222b MI0022373 100 None None High
gga-mir-92-2 MI0029335 1214 chr4 3994560 3994640 - High
gga-mir-125b-1 MI0029337 6039 chr24 3360814 3360905 + High
gga-mir-449d MI0039506 14 chrZ 16702080 16702162 - -
gga-let-7l-1 MI0040762 1540 AADN04005513.1 10244 10320 - -
gga-let-7l-2 MI0040769 1540 AADN04020204.1 2008 2088 - -
gga-mir-122b-1 MI0040772 0 chrW 2525199 2525256 + -
gga-mir-122b-2 MI0040778 0 KQ759512.1 11822 11879 - -



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