Stem-loop gga-mir-122-1

Accession

MI0001277

Description

Gallus gallus gga-mir-122-1 precursor miRNA mir-122

Gene
family

RF00684; mir-122

Literature search

17 open access papers mention gga-mir-122-1
(89 sentences)

Sequence

55123 reads, 771 reads per million, 5 experiments

cagagcugUGGAGUGUGACAAUGGUGUUUGUguccaaucuaucaAACGCCAUUAUCACACUAAAUAgcuacugguag
(((((((((..(((((((.(((((((((((............))))))))))).)))))))..)))))).)))....

Structure

----   -      GG       C           Ugucc 
    cag agcugU  AGUGUGA AAUGGUGUUUG     a
    ||| ||||||  ||||||| |||||||||||      
    guc ucgAUA  UCACACU UUACCGCAAac     a
gaug   a      AA       A           uaucu 

Annotation confidence High

Genome context

chrZ: 761121-761197 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gga-mir-122-1

Mature gga-miR-122-5p

• Accession: MIMAT0001190
• Description: Gallus gallus gga-miR-122-5p mature miRNA
• Sequence: 9 - UGGAGUGUGACAAUGGUGUUUGU - 31
• Evidence: experimental ; cloned [2], Northern [2], Illumina [3]

Mature gga-miR-122-3p

• Accession: MIMAT0026550
• Description: Gallus gallus gga-miR-122-3p mature miRNA
• Sequence: 45 - AACGCCAUUAUCACACUAAAUA - 66
• Evidence: experimental ; Illumina [3]

References

1. PubMed ID: 15592404
   Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
   "International Chicken Genome Sequencing Consortium"
   "Nature (2004) 432:695-716


2. 
   "McBride D, Carre W, Law A, Clinton M"
   (None) None:


3. PubMed ID: 16750530
   Identification of microRNAs from different tissues of chicken embryo and adult chicken
   "Xu H, Wang X, Du Z, Li N"
   "FEBS Lett (2006) 580:3610-3616


4. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45