Stem-loop rno-mir-3580

Accession

MI0015453

Description

Rattus norvegicus rno-mir-3580 precursor miRNA

Literature search

2 open access papers mention rno-mir-3580
(3 sentences)

Sequence

1506 reads, 107 reads per million, 35 experiments

gugugcuaugcccUGCUUGUACUUAUUCUGGUGACaugagguaucugUGACUAGGGUAGUAUGAGUAGAguaaaguucacc
(((.(((.(((.(((((((((((.((((((((.(((.((....))))).))))))))))))))))))).))).))).))).

Structure

-   u   a   c           U        G   u  g 
 gug gcu ugc cUGCUUGUACU AUUCUGGU ACa ga g
 ||| ||| ||| ||||||||||| |||||||| ||| ||  
 cac uga aug GAUGAGUAUGA UGGGAUCA Ugu cu u
c   u   a   A           -        G   -  a 

Annotation confidence High

Genome context

chrX: 151295615-151295695 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from rno-mir-3580

Mature rno-miR-3580-5p

• Accession: MIMAT0017868
• Description: Rattus norvegicus rno-miR-3580-5p mature miRNA
• Sequence: 14 - UGCUUGUACUUAUUCUGGUGAC - 35
• Evidence: experimental ; SOLiD [1]

Mature rno-miR-3580-3p

• Accession: MIMAT0017869
• Description: Rattus norvegicus rno-miR-3580-3p mature miRNA
• Sequence: 48 - UGACUAGGGUAGUAUGAGUAGA - 69
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249