miRBase entry: cin-mir-4003a-1

Stem-loop cin-mir-4003a-1


Accession
MI0015522
Description
Ciona intestinalis cin-mir-4003a-1 precursor miRNA
Gene family
MIPF0000840; mir-4003


Sequence

153 reads, 66 reads per million, 2 experiments
UGAGUUGGUUAUACAUUCUUgcgguauuaaaguaacagCAAGAAUUUUAACCAACACA
...((((((((...((((((((.((.........)).))))))))..))))))))...

Structure
UGA        UAC        g  auu 
   GUUGGUUA   AUUCUUgc gu   a
   ||||||||   |||||||| ||   a
   CAACCAAU   UAAGAACg ca   a
ACA        -UU        a  aug 


Annotation confidence Not enough data
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Genome context
7q: 6152459-6152516 [-]
Clustered miRNAs
8 other miRNAs are < 10 kb from cin-mir-4003a-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cin-miR-4003a-5p

Accession MIMAT0016461
Description Ciona intestinalis cin-miR-4003a-5p mature miRNA
Sequence 1 - UGAGUUGGUUAUACAUUCUU - 20
Evidence experimental
Illumina [1]

Mature cin-miR-4003a-3p

Accession MIMAT0016462
Description Ciona intestinalis cin-miR-4003a-3p mature miRNA
Sequence 39 - CAAGAAUUUUAACCAACACA - 58
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39