Stem-loop vvi-MIR2950

Accession

MI0016016

Description

Vitis vinifera vvi-MIR2950 precursor miRNA

Gene family

MIPF0001121; MIR2950

Literature search

2 open access papers mention vvi-MIR2950
(4 sentences)

Sequence

596 reads, 41 reads per million, 2 experiments

uggcuuacaugggcuugugauguaUUCCAUCUCUUGCACACUGGAccagcgcuccagcugcaguuUGGUGUGCACGGGAUGGAAUAcaucauggauucaugaugugg
.......((((((.(((((((((((((((((((.((((((((((((((((......))))..)))))))))))).))))))))))))))))))).))))))......

Structure

uggcuua      c                   U            --    gc 
       cauggg uugugauguaUUCCAUCUC UGCACACUGGAc  cagc  u
       |||||| ||||||||||||||||||| ||||||||||||  ||||   
       guacuu gguacuacAUAAGGUAGGG ACGUGUGGUuug  gucg  c
-ggugua      a                   C            ac    ac 

Annotation confidence High

Genome context

chr7: 14340407-14340513 [+]

Mature vvi-miR2950-5p

• Accession: MIMAT0018009
• Description: Vitis vinifera vvi-miR2950-5p mature miRNA
• Sequence: 25 - UUCCAUCUCUUGCACACUGGA - 45
• Evidence: experimental ; Illumina [1]

Mature vvi-miR2950-3p

• Accession: MIMAT0018010
• Description: Vitis vinifera vvi-miR2950-3p mature miRNA
• Sequence: 66 - UGGUGUGCACGGGAUGGAAUA - 86
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20230504
   Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis
   "Pantaleo V, Szittya G, Moxon S, Miozzi L, Moulton V, Dalmay T, Burgyan J"
   "Plant J (2010) 62:960-976