Stem-loop vvi-MIR3625

Accession

MI0016018

Description

Vitis vinifera vvi-MIR3625 precursor miRNA

Sequence

480 reads, 26 reads per million, 2 experiments

caagaagacuauaccuuauacaucaguuuuggcUUCCAGCAGUCAUCUCCAAGGuggagcaaaacuugauugcccuugcugaauugaucugcuccuccCGGGAGAUGACUACUGGAAGCcaaaacucguauuuguguguguguaugcucuguuug
((((.(((.(((((..(((((((((((((((((((((((.((((((((((..((.((((((..........((....))..........)))))).))..)))))))))).))))))))))))))).).....))))))).))))).))).))))

Structure

    a   c     cu       ----- -               C          AA  u      aaacuugauu  c 
caag aga uauac  uauacau     c aguuuuggcUUCCAG AGUCAUCUCC  GG ggagca          gc c
|||| ||| |||||  |||||||     | ||||||||||||||| ||||||||||  || ||||||          ||  
guuu ucu guaug  gugugug     g ucaaaacCGAAGGUC UCAGUAGAGG  cc ccucgu          cg u
    g   c     -u       uuuau c               A          GC  u      cuaguuaagu  u 

Annotation confidence Not enough data

Genome context

chr17: 2378186-2378340 [-]

Mature vvi-miR3625-5p

• Accession: MIMAT0018013
• Description: Vitis vinifera vvi-miR3625-5p mature miRNA
• Sequence: 34 - UUCCAGCAGUCAUCUCCAAGG - 54
• Evidence: experimental ; Illumina [1]

Mature vvi-miR3625-3p

• Accession: MIMAT0018014
• Description: Vitis vinifera vvi-miR3625-3p mature miRNA
• Sequence: 99 - CGGGAGAUGACUACUGGAAGC - 119
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20230504
   Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis
   "Pantaleo V, Szittya G, Moxon S, Miozzi L, Moulton V, Dalmay T, Burgyan J"
   "Plant J (2010) 62:960-976