Stem-loop vvi-MIR3627

Accession

MI0016020

Description

Vitis vinifera vvi-MIR3627 precursor miRNA

Gene family

MIPF0001471; MIR3627

Literature search

1 open access papers mention vvi-MIR3627
(1 sentences)

Sequence

gaaggaaagcgagaaagaaagagggguuggggguuucUUGUCGCAGGAGAGACGGCACUugcucuuguguagcaaauugcaagcggcaaUCGCCGCUCUCCUGUGACAAGauacccuucagcuucuuuccuacauucuucgcccuac
..(((...(((((((((..(((((((((((((((.((((((((((((((((.((((..(((((((((((........)))))).)))))..)))))))))))))))))))).)))).))))))))))).))...))).)))))))..

Structure

ga   aaa    -   ---  aa           -    u                A    AC     -      uag 
  agg   gcga gaa   ag  agagggguugg gggu ucUUGUCGCAGGAGAG CGGC  Uugcu cuugug   c
  |||   |||| |||   ||  ||||||||||| |||| |||||||||||||||| ||||  ||||| ||||||    
  ucc   cgcu cuu   uc  uuucuucgacu ccca aGAACAGUGUCCUCUC GCCG  aacgg gaacgu   a
ca   ---    u   aca  -c           u    u                -    CU     c      uaa 

Annotation confidence Not enough data

Genome context

chr14: 28302547-28302693 [-]

Mature vvi-miR3627-5p

• Accession: MIMAT0018017
• Description: Vitis vinifera vvi-miR3627-5p mature miRNA
• Sequence: 38 - UUGUCGCAGGAGAGACGGCACU - 59
• Evidence: experimental ; Illumina [1]

Mature vvi-miR3627-3p

• Accession: MIMAT0018018
• Description: Vitis vinifera vvi-miR3627-3p mature miRNA
• Sequence: 90 - UCGCCGCUCUCCUGUGACAAG - 110
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20230504
   Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis
   "Pantaleo V, Szittya G, Moxon S, Miozzi L, Moulton V, Dalmay T, Burgyan J"
   "Plant J (2010) 62:960-976