miRBase entry: vvi-MIR3631d

Stem-loop vvi-MIR3631d


Accession
MI0016030
Description
Vitis vinifera vvi-MIR3631d precursor miRNA
Gene family
MIPF0001100; MIR3631

Literature search
2 open access papers mention vvi-MIR3631d
(4 sentences)

Sequence

187 reads, 2 reads per million, 2 experiments
uaaaaguaaccuauuaauaucaaccaacauaauuaaaagugaacuuguuauuaucaauaaguuuaguuuaguuauauuuauugauauuaauaaguuacuuuuaacggaauaggaaaaacuaaggugauguuuguuuuuaguuuuuucuauucagauaaaaguaaCAUGUUGACAUCAUCCAAUAUAauuaaacugaacauauaacaaguucauuuuaauuauguuggauaauaucaauagauuacuuuua
(((((((((.(((((.((((...(((((((((((((((.((((((((((((.........((((((((((((((((((...((((.((((((.((((((((((.(.((((((((((((((((((..........)))))))))))))))))).).)))))))))).)))))).))))...))))))))))))))))))..)))))))))))))))))))))))))))...)))).))))).)))))))))

Structure
         c     a    caa               g            uaucaauaa                  uau    a      a          a g                  ugau 
uaaaaguaa cuauu auau   ccaacauaauuaaaa ugaacuuguuau         guuuaguuuaguuauauu   ugau uuaaua guuacuuuua c gaauaggaaaaacuaagg    g
||||||||| ||||| ||||   ||||||||||||||| ||||||||||||         ||||||||||||||||||   |||| |||||| |||||||||| | ||||||||||||||||||     
auuuucauu gauaa uaua   gguuguauuaauuuu acuugaacaaua         caagucaaauuaAUAUAA   ACUA AGUUGU Caaugaaaau g cuuaucuuuuuugauuuu    u
         a     c    aua               -            -------ua                  CCU    C      A          a a                  uguu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature vvi-miR3631d

Accession MIMAT0018034
Description Vitis vinifera vvi-miR3631d mature miRNA
Sequence 165 - CAUGUUGACAUCAUCCAAUAUA - 186
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20230504
    Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis
    "Pantaleo V, Szittya G, Moxon S, Miozzi L, Moulton V, Dalmay T, Burgyan J"
    "Plant J (2010) 62:960-976