Stem-loop vvi-MIR3632

Accession

MI0016031

Description

Vitis vinifera vvi-MIR3632 precursor miRNA

Sequence

538 reads, 31 reads per million, 2 experiments

guguaggagaaaguaaagggagagugagagaauggggagcgucuGGAUUGGGGGCCGAUGGAAAGGgucccuaaacauuugaagaugugugaagauaccUUUCCCAGACCCCCAAUACCAAaggcuucccaccuucccaucccuuccuucucucugcau
(((((((((((.(..((((((...((.(((..((((((((.(.(((((((((((.(...((((((((((.....(((((....))))).....))).)))))))..).)))))))).))).).))))))))..))).))))))))).))))).))))))

Structure

      -     a ua      gag  a   aa        g c   -        C GAU       -   ccuaa     u 
guguag gagaa g  aaggga   ug gag  uggggagc u uGG AUUGGGGG C   GGAAAGG guc     acauu g
|||||| ||||| |  ||||||   || |||  |||||||| | ||| |||||||| |   ||||||| |||     |||||  
uacguc cucuu c  uucccu   ac cuu  acccuucg a ACC UAACCCCC G   CCUUUcc uag     uguag a
      u     c --      ---  c   cc        g A   A        A -AC       a   aagug     a 

Annotation confidence High

Genome context

chr14: 23394870-23395028 [+]

Mature vvi-miR3632-5p

• Accession: MIMAT0018035
• Description: Vitis vinifera vvi-miR3632-5p mature miRNA
• Sequence: 45 - GGAUUGGGGGCCGAUGGAAAGG - 66
• Evidence: experimental ; Illumina [1]

Mature vvi-miR3632-3p

• Accession: MIMAT0018036
• Description: Vitis vinifera vvi-miR3632-3p mature miRNA
• Sequence: 100 - UUUCCCAGACCCCCAAUACCAA - 121
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20230504
   Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis
   "Pantaleo V, Szittya G, Moxon S, Miozzi L, Moulton V, Dalmay T, Burgyan J"
   "Plant J (2010) 62:960-976