Stem-loop vvi-MIR3633a

Accession

MI0016032

Description

Vitis vinifera vvi-MIR3633a precursor miRNA

Gene family

MIPF0000403; MIR482

Literature search

2 open access papers mention vvi-MIR3633a
(3 sentences)

Sequence

17243 reads, 1160 reads per million, 2 experiments

gaaaugggagaugaauauuucgaaagcaauaGGAAUGGAUGGUUAGGAGAGaacuccucuuauauauuucuucaucuucuccgccggagauguggaagugcaguuggUUCCUAUACCACCCAUUCCCUAcgguuuucgaaauuuucucccuuuuc
((((.((((((.....(((((((((((..(((((((((.((((((((((..((((.........(((((((.(((((((......))))))).))))))).))))..)))))).)))).))))).))))..)))))))))))..)))))).))))

Structure

    u      ugaau           aa    -     A    -      AG    ccucuuaua       u       uc 
gaaa gggaga     auuucgaaagc  uaGG AAUGG UGGU UAGGAG  aacu         uauuucu caucuuc  c
|||| ||||||     |||||||||||  |||| ||||| |||| ||||||  ||||         ||||||| |||||||   
cuuu cccucu     uaaagcuuuug  AUCC UUACC ACCA AUCCUU  uuga         gugaagg guagagg  g
    u      ---uu           gc    C     C    U      gg    --------c       u       cc 

Annotation confidence High

Genome context

chr17: 5521907-5522061 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from vvi-MIR3633a

Mature vvi-miR3633a-5p

• Accession: MIMAT0018037
• Description: Vitis vinifera vvi-miR3633a-5p mature miRNA
• Sequence: 32 - GGAAUGGAUGGUUAGGAGAG - 51
• Evidence: experimental ; Illumina [1]

Mature vvi-miR3633a-3p

• Accession: MIMAT0018038
• Description: Vitis vinifera vvi-miR3633a-3p mature miRNA
• Sequence: 108 - UUCCUAUACCACCCAUUCCCUA - 129
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20230504
   Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis
   "Pantaleo V, Szittya G, Moxon S, Miozzi L, Moulton V, Dalmay T, Burgyan J"
   "Plant J (2010) 62:960-976