Stem-loop sequence vvi-MIR3633b

Accession

MI0016034

Description

Vitis vinifera miR3633b stem-loop

Stem-loop

      ag  cc               -     u     ---    --cuu      a 
ucccgg  gc  augggaauggguggc uggga cuaau   guuu     cacauc u
||||||  ||  ||||||||||||||| ||||| |||||   ||||     |||||| g
agggcc  ug  uauccuuaccuaccg acccu gguug   cgaa     guguag u
      cu  -c               u     u     agu    aaacu      a 

Genome context

• Coordinates (Genoscope-20100122): chr17: 5521567-5521678 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from vvi-MIR3633b

• vvi-MIR3633b: chr17: 5521567-5521678 [+]
• vvi-MIR3633a: chr17: 5521907-5522061 [+]
• vvi-MIR482: chr17: 5523024-5523140 [+]

Mature sequence vvi-miR3633b-5p

• Accession: MIMAT0018041
• Previous IDs: vvi-miR3633b
• Sequence: 16 - ggaauggguggcugggaucua - 36
• Evidence: experimental; Solexa [1]

Mature sequence vvi-miR3633b-3p

• Accession: MIMAT0018042
• Previous IDs: vvi-miR3633b*
• Sequence: 79 - guucccaugccauccauuccua - 100
• Evidence: experimental; Solexa [1]

References

1. PMID:20230504 "Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis" Pantaleo V, Szittya G, Moxon S, Miozzi L, Moulton V, Dalmay T, Burgyan J Plant J. 62:960-976(2010).