Stem-loop vvi-MIR3639

Accession

MI0016039

Description

Vitis vinifera vvi-MIR3639 precursor miRNA

Literature search

2 open access papers mention vvi-MIR3639
(8 sentences)

Sequence

93 reads, 6 reads per million, 2 experiments

guucaaaagcucuuguugaauaacaaugauacacgaugaagcuucguuauaaaaaaacuuuuaaaaccuguuuggAUUGACUUCUGAAAGGCUAAAAGCucuuauuaagcuuaaauaaGAGCUUUUGGCUUCUCAGAAGUCAauccaaacaaggucuuaaaauuuuuuuauaauaaaguuugaaacguuguuauuaucaucaacgcuuuuguac
((.(((((((..(((.((((((((((((........(.((((((.((((((((((((.((((((.((((((((((((((((((((((.((((((((((((((((((.......)))))))))))))))))).)))))))))))))))))).)))).)))))))))))))))))).)))))).)..)))))))))..))).))).))))))).))

Structure

  u       uc   u   --         auacacga g      c            c      a    -                  A                  aa 
gu caaaagc  uug uga  auaacaaug        u aagcuu guuauaaaaaaa uuuuaa accu guuuggAUUGACUUCUGA AGGCUAAAAGCucuuauu  g
|| |||||||  ||| |||  |||||||||        | |||||| |||||||||||| |||||| |||| |||||||||||||||||| ||||||||||||||||||  c
ca guuuucg  aac acu  uauuguugc        a uuugaa uaauauuuuuuu aaaauu ugga caaaccuaACUGAAGACU UUCGGUUUUCGAGaauaa  u
  u       -c   u   au         ------aa g      a            -      c    a                  C                  au 

Annotation confidence Not enough data

Genome context

chr9: 21823006-21823219 [+]

Mature vvi-miR3639-5p

• Accession: MIMAT0018051
• Description: Vitis vinifera vvi-miR3639-5p mature miRNA
• Sequence: 76 - AUUGACUUCUGAAAGGCUAAAAGC - 99
• Evidence: experimental ; Illumina [1]

Mature vvi-miR3639-3p

• Accession: MIMAT0018052
• Description: Vitis vinifera vvi-miR3639-3p mature miRNA
• Sequence: 119 - GAGCUUUUGGCUUCUCAGAAGUCA - 142
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20230504
   Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis
   "Pantaleo V, Szittya G, Moxon S, Miozzi L, Moulton V, Dalmay T, Burgyan J"
   "Plant J (2010) 62:960-976