miRBase entry: tca-mir-3824

Stem-loop tca-mir-3824


Accession
MI0016284
Description
Tribolium castaneum tca-mir-3824 precursor miRNA


Sequence

auggacaaagacugauacgcggUGUAAAAUUGGUUCGACUAUUUgugaacuaaauaaAUGGUUGAGUCAGUUUUGCACCguauaucaguuaaugaca
.....((..((((((((.((((((((((((((((((((((((((((.......)))))))))))))))))))))))))))).))))))))..))...

Structure
augga  aa        c                            ga 
     ca  gacugaua gcggUGUAAAAUUGGUUCGACUAUUUgu  a
     ||  |||||||| ||||||||||||||||||||||||||||  c
     gu  uugacuau ugCCACGUUUUGACUGAGUUGGUAaaua  u
--aca  aa        a                            aa 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
ChLGX: 5781786-5781882 [-]
Clustered miRNAs
28 other miRNAs are < 10 kb from tca-mir-3824
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tca-miR-3824-5p

Accession MIMAT0018674
Description Tribolium castaneum tca-miR-3824-5p mature miRNA
Sequence 23 - UGUAAAAUUGGUUCGACUAUUU - 44
Evidence experimental
SOLID [1]
Database links

Mature tca-miR-3824-3p

Accession MIMAT0018675
Description Tribolium castaneum tca-miR-3824-3p mature miRNA
Sequence 58 - AUGGUUGAGUCAGUUUUGCACC - 79
Evidence experimental
SOLID [1]
Database links

References

  1. PubMed ID: 20817720
    Functional shifts in insect microRNA evolution
    "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
    "Genome Biol Evol (2010) 2:686-696