Stem-loop sequence tca-mir-3811b

Accession MI0016285
Description Tribolium castaneum miR-3811b stem-loop
Gene family MIPF0001202; mir-3811
Stem-loop 
uuuau            a uc ug    g    -   uaaaua 
     ccaauucucagg u  u  cuca gguu uac      u
     |||||||||||| |  |  |||| |||| |||       
     gguugggagucc a  g  gagu ccaa aug      g
ugacu            - ga gu    g    c   uauaaa
Get sequence
Deep sequencing
1136 reads, 1 experiments
Genome context
Coordinates (Tcas3.0) Overlapping transcripts
chrLG1: 8498053-8498138 [+]
intergenic
Clustered miRNAs
< 10kb from tca-mir-3811b
tca-mir-3813 chrLG1: 8488676-8488768 [+]
tca-mir-3820 chrLG1: 8488902-8488994 [+]
tca-mir-3814 chrLG1: 8489232-8489323 [+]
tca-mir-6007 chrLG1: 8492377-8492463 [+]
tca-mir-3810 chrLG1: 8492765-8492866 [+]
tca-mir-3829 chrLG1: 8494396-8494485 [+]
tca-mir-3807 chrLG1: 8494849-8494947 [+]
tca-mir-3815 chrLG1: 8495199-8495293 [+]
tca-mir-3822 chrLG1: 8495616-8495778 [+]
tca-mir-3812 chrLG1: 8496077-8496196 [+]
tca-mir-3816 chrLG1: 8496207-8496378 [+]
tca-mir-3826 chrLG1: 8496423-8496535 [+]
tca-mir-3817 chrLG1: 8496709-8496824 [+]
tca-mir-3828 chrLG1: 8496935-8497035 [+]
tca-mir-3808 chrLG1: 8497132-8497243 [+]
tca-mir-3811a chrLG1: 8497719-8497815 [+]
tca-mir-3811b chrLG1: 8498053-8498138 [+]
tca-mir-3811c-1 chrLG1: 8498375-8498471 [+]
tca-mir-3811c-2 chrLG1: 8498710-8498806 [+]
tca-mir-3811d chrLG1: 8499035-8499138 [+]
tca-mir-3805b chrLG1: 8499375-8499478 [+]
tca-mir-3811e chrLG1: 8499605-8499716 [+]
tca-mir-3806 chrLG1: 8499798-8499943 [+]
tca-mir-3805a chrLG1: 8500013-8500108 [+]
tca-mir-3824 chrLG1: 8501573-8501669 [+]
tca-mir-3823 chrLG1: 8501770-8501860 [+]
Database links

Mature sequence tca-miR-3811b-5p

Accession MIMAT0018676
Sequence

19 -  

uucuugcucaggguuuac

 - 36

Get sequence
Deep sequencing 386 reads, 1 experiments
Evidence experimental; SOLID [1]

Mature sequence tca-miR-3811b-3p

Accession MIMAT0018677
Sequence

48 -  

uauguacaaccgugaguggagacc

 - 71

Get sequence
Deep sequencing 750 reads, 1 experiments
Evidence experimental; SOLID [1]

References

1
PMID:20817720 "Functional shifts in insect microRNA evolution" Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S Genome Biol Evol. 2:686-696(2010).