miRBase entry: tca-mir-3811b

Stem-loop tca-mir-3811b


Accession
MI0016285
Description
Tribolium castaneum tca-mir-3811b precursor miRNA
Gene family
MIPF0001202; mir-3811


Sequence

auacgguuuuaacuaauucucaggaUUCUUACUUGCGGUGUACAuguuuugguaugaauaguaaaUAUGUACAACCGUGAGUGGAGACUggggguugguuagucaacagcuu
.....((((((((((((((((((..(((..(((((((((((((((((((.............)))))))))).))))))))))))..)))))))))))))))..))).....

Structure
auacg   --               ga   UU         -          uggua 
     guu  uuaacuaauucucag  UUC  ACUUGCGGU GUACAuguuu     u
     |||  |||||||||||||||  |||  ||||||||| ||||||||||     g
     caa  gauugguugggggUC  AGG  UGAGUGCCA CAUGUAUaaa     a
uucga   cu               AG   --         A          ugaua 


Annotation confidence Not enough data
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Genome context
ChLGX: 5783739-5783850 [-]
Clustered miRNAs
28 other miRNAs are < 10 kb from tca-mir-3811b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tca-miR-3811b-5p

Accession MIMAT0018664
Description Tribolium castaneum tca-miR-3811b-5p mature miRNA
Sequence 26 - UUCUUACUUGCGGUGUACA - 44
Evidence experimental
SOLID [1]

Mature tca-miR-3811b-3p

Accession MIMAT0018665
Description Tribolium castaneum tca-miR-3811b-3p mature miRNA
Sequence 66 - UAUGUACAACCGUGAGUGGAGACU - 89
Evidence experimental
SOLID [1]

References

  1. PubMed ID: 20817720
    Functional shifts in insect microRNA evolution
    "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
    "Genome Biol Evol (2010) 2:686-696